Serum, it was actually a two-man job. After I put the Loctite #638 on the shaft and inside the magnet (hole) I slipped my alignment tool (basically a big spacer I made from some scrap) over the shaft and clamped the rotor in a vise, snug but not so snug that I could not turn the two magnets. Then using the black line on the two magnets (placed there by the factory) I turned the magnets until the black lines matched up. Then as I held them in place my brother tightened the vise so that everything was pretty much locked into place. I left it that way for 24 hours, then I removed it from the vise, cleaned it up, glued the end piece on with JB Weld and let it cure for another 24 hours. I put everything back together and put the motor back into my truggy. I ran it a bit around the backyard and it felt the same as before (power wise). I still need to give it a good work out at the track to see if it holds up.
That's odd, my 540C 7XL came as a 3 section rotor/magnet. How old is your motor?
“The modern astrophysical concept that ascribes the sun’s energy to thermonuclear reactions deep in the solar interior is contradicted by nearly every observable aspect of the sun.” —Ralph E. Juergens